File types | Find file converter | Software | Articles | FAQs | Privacy policy | About us | RSS Could you please help with this?Īttachments. So I apparently need to convert the original image into a 4-layer tif, but I am not sure how to do that using the bfopen and imwrite2tif codes that I have at my disposal.
I inverted the original image A.scn (theoretically the same function as imcomplement) and then exported for publication at 300dpi.Ī.tif: Size = 1985x2480x4, Bytes = 19691200, Class = uint8Ī.scn.tif: Size = 2208x2758, Bytes = 12179328, Class = uint16 My aim is to get the image that looks like A.tif (attached), which I generated using the Image Lab software provided by Bio-Rad. However, when I open it using the Windows Photo Viewer or any microsoft office document (MS Word or MS Powerpoint), it looks very white. This is saving a file, which I can open using ImageJ, and it looks fine. I am using the following code to convert it to A.scn.tif (attached). Now I would like to optimize the performance: please look at the attached files. I can read the image and save it as tiff, thanks for your help with that. Sbesson Team Member Posts: 421 Joined: Tue 7:20 pm If the above still reports an error message, we might need a sample file to help you further with this issue
If you have downloaded the latest Bio-Formats MATLAB toolbox, you should be able to put these JARs on the classpath and return the version of the library via:Ĭode: Select all = bfCheckJavaPath()Īssuming you have done the above and are running the latest version (currently 5.8.2), could you check that the toolbox functions return the same behavior as your imreadBF function e.g. The error below tells you that the Bio-Formats JARs are not on the Java classpath. What I did was I downloaded the Bio-Formats zipped folder bfmatlab and unzipped on my MATLAB path.
Seems like the Bio-Formats version is the culprit.Ĭode: Select all disp(char()) Thanks! jyotani Posts: 4 Joined: Wed 8:42 pm : Unknown file format: A.scnĪt (ImageReader.java:192)Īt (ImageReader.java:727)Īt (ReaderWrapper.java:529)Īt (ChannelFiller.java:263)Īt (ChannelSeparator.java:274) > In javaclasspath>local_javapath (line 190) Warning: Objects of loci/formats/UnknownFormatException class exist - not clearing java I checked the documentation ( ) but not sure how to use the Java source code.įollowing is the command and output of the imreadBF code that I am getting:Ĭ:\Users\jyot.antani\Documents\MATLAB\MATLAB files_Jyot\loci_tools.jar How do I get MATLAB to read ImageLab format (.scn) file?
0 kommentar(er)
